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It seems that you have tried everything, does your phone has both SIM and SD cards ? maybe remove them, you can't use PCC anymore as you unlocked the bootloader
I dunno if this means anything to you, but this is as far as I could go with Flashtool:
06/056/2015 17:56:00 - INFO - Loader : S1_Root_2f8b - Version : MT6582_15 / Boot version : S1_Boot_MT6582_TC9SP_11 / Bootloader status : ROOTED
06/056/2015 17:56:00 - INFO - Transfer buffer size : 262144
06/056/2015 17:56:01 - INFO - You must have the according fsc script to flash this device.
06/056/2015 17:56:01 - INFO - Flashing finished.
06/056/2015 17:56:01 - INFO - Please unplug and start your phone
06/056/2015 17:56:01 - INFO - For flashtool, Unknown Sources and Debugging must be checked in phone settings
It's weird because I'm sure I've already installed all the necessary drivers..
@xperiaperson
Thank you for you response, but that's exactly the version I'm using. On the latest I get IO Exception error.
And one more thing, the device is recognized as somc flash device on device manager, dunno if it's relevant.